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Publications

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Kind T, Scholz M, Fiehn O
How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry.
PLoS ONE 4(5): e5440. (2009); doi:10.1371/journal.pone.0005440 [LINK]

Carsten Denkert, Jan Budczies, Wilko Weichert, Gert Wohlgemuth, Martin Scholz, Tobias Kind, Silvia Niesporek, Aurelia Noske, Anna Buckendahl, Manfred Dietel, Oliver Fiehn
Metabolite profiling of human colon carcinoma - deregulation of TCA cycle and amino acid turnover; Molecular Cancer 2008, 7:72; [LINK]

Kind, T., Fiehn, O.,
Hardware and software challenges for the near future: Structure elucidation concepts via hyphenated chromatographic techniques, IN: MS-Practical Art, Balogh, M.P. (ed.), LC-GC North America 26, 176-187 (2008). [LINK]
 
Fiehn O, Wohlgemuth G, Scholz M, Kind T, Lee DY, Lu Y, Moon S, Nikolau BJ
Quality control for plant metabolomics: Reporting MSI-compliant studies. Plant Journal (2008) 53, 691-704 [LINK]
 
Kind, T
Instant-JChem
CHEMISTRY WORLD, 4 (11): 68-68 NOV 2007 [LINK]
 
Kind, T; Fiehn, O
Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry
BMC BIOINFORMATICS, 8: Art. No. 105 MAR 27 2007 [LINK] [PDF]
 
Kind, T; Tolstikov, V; Fiehn, O; et al.
A comprehensive urinary metabolomic approach for identifying kidney cancer
ANALYTICAL BIOCHEMISTRY, 363 (2): 185-195 APR 15 2007 [LINK]
 
Denkert, C; Budczies, J; Kind, T; et al.
Mass spectrometry-based metabolic profiling reveals different metabolite patterns in invasive ovarian carcinomas and ovarian borderline tumors
CANCER RESEARCH, 66 (22): 10795-10804 NOV 15 2006  [LINK]
 
Fiehn O, Kind T (2006)
Metabolite profiling in blood plasma. In: Metabolomics: Methods and Protocols. Weckwerth W (ed.), Humana Press, Totowa NJ, ISBN13: 978-1-59745-244-1. Methods in Molecular Biology 358, 3-18 [LINK]
 
Kind, T; Fiehn, O
Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm
BMC BIOINFORMATICS, 7: Art. No. 234 APR 28 2006  [LINK] [PDF]
 
Eckel, WP; Kind, T
Use of boiling point-Lee retention index correlation for rapid review of gas chromatography-mass spectrometry data
ANALYTICA CHIMICA ACTA, 494 (1-2): 235-243 OCT 8 2003 [LINK]
 
Brack, W; Kind, T; Hollert, H; et al.
Sequential fractionation procedure for the identification of potentially cytochrome P4501A-inducing compounds
JOURNAL OF CHROMATOGRAPHY A, 986 (1): 55-66 JAN 31 2003 [LINK]
 
Brack, W; Kind, T; Schrader, S; et al.
Polychlorinated naphthalenes in sediments from the industrial region of Bitterfeld
ENVIRONMENTAL POLLUTION, 121 (1): 81-85 2003  [LINK]
 
Brack, W; Schirmer, K; Kind, T; et al.
Effect-directed fractionation and identification of cytochrome P4501A-inducing halogenated aromatic hydrocarbons in a contaminated sediment
ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY, 21 (12): 2654-2662 DEC 2002 [LINK]
 

Conferences talks and posters

Metabolomics Society Conference 2009 - Edmonton, Alberta, Canada
Lipidomic changes in hepatic lipase knockout mice revealed by chip-based direct infusion nanoelectrospray ion trap mass spectrometry
Kwang-Hyeon Liu, Serena M Pratt, Saeed Khazaie, Do Yup Lee, Tobias Kind, Jens Hoefken, Craig Warden, and Oliver Fiehn [PDF]

Metabolomics Society Conference 2009 - Edmonton, Alberta, Canada
Lipid identification by tandem mass spectrometry using an in-silico generated fragment database
Tobias Kind, Kwang-Hyeon Liu, Do Yup Lee, Oliver Fiehn

ChemAxon 2009 US User Group Meeting, San Diego, CA (session talk)
Cheminformatics approaches for metabolomics
Tobias Kind, UC Davis Genome Center [PDF] [WEB]

PITTCON Conference 2009, Chicago (invited session talk)
Compound identification in GC-MS based metabolomics.
Tobias Kind and Oliver Fiehn; UC Davis Genome Center - Metabolomics
 
Conference: Metabolomics Society Meeting 2008, Boston (session talk)
Annotation of unknown metabolites with accurate mass LC-MS/MS and GC-MS by constraining metabolite database queries using analytical metadata
Tobias Kind, UC Davis Genome Center:

Conference: Metabolomics Society Meeting 2008, Boston
Mapping metabolic alterations in rat lungs and blood plasma
Dinesh Kumar, Tobias Kind, Carol Hood, Jesse Joad, Kent Pinkerton, Oliver Fiehn 
UC Davis - Metabolomics, Davis, CA [PDF]

Conference: Metabolomics Society Meeting 2008, Boston
Plasma Lipid Profiling Using Chip-Based Direct Infusion Nanospray Tandem Mass Spectrometry
Kwang-Hyeon Liu, Do Yup Lee, Tobias Kind, and Oliver Fiehn
 
COSMOS Small Molecule Science Conference 2008, San Jose CA (session talk)
Using GC-MS, LC-MS and FT-ICR-MS Data for Structure Elucidation of Small Molecules
Tobias Kind; UC Davis Genome Center - Metabolomics  [LINK] [PDF]
 
American Society for Mass Spectrometry - ASMS Conference 2008 Denver (session talk)
Structural annotation of small molecules by mass spectral libraries, substructure information and accurate mass GC-MS data
TOBIAS KIND; Gert Wohlgemuth; Yun Lu; Mine Palazoglu; Martin Scholz; Oliver Fiehn
UC Davis - Metabolomics, Davis, CA   [PDF]
 
ASMS Conference 2008, Denver USA
Biochemical Mapping of Metabolic Alterations in Lungs of Rat Embryos
OLIVER FIEHN; Dinesh Kumar; Gert Wohlgemuth; Jesse Joad; Carol Hood; Kent Pinkerton; Tobias Kind; UC Davis, Davis, CA   [PDF]
 
ASMS Conference 2008, Denver USA
Mapping of Chemical and Biochemical Relationships of Mass Spectrometry-based Metabolomics Data
Dinesh Kumar; Tobias Kind; OLIVER FIEHN; UC Davis, Davis, CA   [PDF]
 
ASMS Conference 2008, Denver USA
An automated workflow for rapid alignment and identification of lipid biomarkers obtained from chip-based direct infusion nanoelectrospray tandem mass spectrometry
Jens Hoefkens (1); TOBIAS KIND (2); Kent Pinkerton (3); Oliver Fiehn (2)
(1) Genedata Inc, Waltham, MA; (2) UC Davis - Metabolomics, Davis, CA; (3) UC Davis Center for Health and the Environment, Davis, CA  [PDF]
 
ASMS Conference 2007, Indianapolis USA
A machine learning pipeline for substructure detection in unknown mass spectra
Tobias Kind; Oliver Fiehn; UC Davis - Metabolomics, Davis, CA   [PDF]
 
ASMS Conference 2006, Seattle USA
Profiling of Urinary Metabolites
Vladimir V. Tolstikov, Tobias Kind, Kindra D. Brooks, Robert H. Weiss; UC Davis - Metabolomics, Davis, CA  [PDF]
 
ASMS Conference 2005, San Antonio USA
High quality plant metabolomics by GC-TOF mass spectrometry and automated database annotation: 1000 runs * 500 metabolites
Oliver Fiehn; Tobias Kind; Gert Wohlgemuth; UC Davis Genome Center, Davis, CA   [PDF]
 
ASMS Conference 2005, San Antonio USA
Automated two step derivatization coupled to Direct-Thermal-Desorption GC-TOF-MS
Tobias Kind (1); Oliver Lerch (2); Peter Tablack (3); Carsten Denkert (4); Oliver Fiehn (1);
(1) UC Davis Genome Center, Davis, CA; (2) Gerstel GmbH, Mülheim an der Ruhr, Germany; (3) Leco GmbH, Mönchengladbach, Germany; 4-Institute of Pathology, Humboldt University, Berlin, Germany;   [PDF]
 
ASMS 2005 Conference, San Antonio USA (talk - metabolomics user group meeting)
Metabolomic Workflows: Integrating Biological and MS Metadata
Tobias Kind; Martin Scholz; Gert Wohlgemuth; Oliver Fiehn; UC Davis Genome Center, Davis, CA
 
SETAC World Congress 2000, Brighton, UK (session talk)
Fractionation and chemical analysis of watercourse SPMD extracts
Kind, Tobias, Vrana, Brano, Brack, Werner, Schüürmann, Gerrit
UFZ Centre for Environmental Research Halle Leipzig  [PDF]
Created by kind
Last modified 2009-10-19 04:33 PM
 
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