Metabolomics 2008 4th Annual Conference, Sept. 2-6, 2008
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Teaching
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Mass Spectrometry course by Prof. Julie Leary
CHE 241 - Spring 2008 - CRN 16583 (see full UC Davis course system classes.ucdavis.edu)
Teaching PPT slides (Due to some bugs in MS Office you may not see all pictures; see MHT or PDF):
CHE 241 - Spring 2008 - CRN 16583 (see full UC Davis course system classes.ucdavis.edu)
I will start teaching on Feb 22, 25, 27, 29, March 3, 5, 7, 10, 12 and March 14 2008. Last day will be class evaluation.
This is a proxy class. I will focus in the second part on combining mass spectrometry data with cheminformatics and chemometrics. Fully linked Powerpoint slides will be available here before each class. DOI linked reading lists will be available in the PowerPoint, homework tasks will be included.
(A)
Attendees have to have access to own computer (mostly WINDOWS) and UC Davis Internet (for literature) and possibly have to install programs or otherwise will have to ask us for help.
(B)
Please prepare yourself by going trough this list of program and databases which include structure elucidation concepts with FT-MS, MS/MS, GC-MS, LC-MS. Trying out some of the programs and databases will give a slight advantage and better understanding [LINK]
(C)
Please familiarize yourself with concepts which were already introduced by Prof. Leary in the first part of the class. Please follow the left navigation tree on the Seven Golden Rules, which include the concepts of Accurate Mass, Accurate Isotopic Abundances, Mass Resolution, Nitrogen Rule, Ring Double Bond Equivalents, MS/MS Fragmentation, Isotopic Pattern Generators, Formula Generators, Database Annotations, Isomer Generation and the Molecular Formula Space an the Molecular Isomer Space. Each section has links to literature or linked files which are interesting to read. This will give a slight advantage and better understanding during the course. Thank you!
This is a proxy class. I will focus in the second part on combining mass spectrometry data with cheminformatics and chemometrics. Fully linked Powerpoint slides will be available here before each class. DOI linked reading lists will be available in the PowerPoint, homework tasks will be included.
(A)
Attendees have to have access to own computer (mostly WINDOWS) and UC Davis Internet (for literature) and possibly have to install programs or otherwise will have to ask us for help.
(B)
Please prepare yourself by going trough this list of program and databases which include structure elucidation concepts with FT-MS, MS/MS, GC-MS, LC-MS. Trying out some of the programs and databases will give a slight advantage and better understanding [LINK]
(C)
Please familiarize yourself with concepts which were already introduced by Prof. Leary in the first part of the class. Please follow the left navigation tree on the Seven Golden Rules, which include the concepts of Accurate Mass, Accurate Isotopic Abundances, Mass Resolution, Nitrogen Rule, Ring Double Bond Equivalents, MS/MS Fragmentation, Isotopic Pattern Generators, Formula Generators, Database Annotations, Isomer Generation and the Molecular Formula Space an the Molecular Isomer Space. Each section has links to literature or linked files which are interesting to read. This will give a slight advantage and better understanding during the course. Thank you!
Teaching PPT slides (Due to some bugs in MS Office you may not see all pictures; see MHT or PDF):
- Course 1: General Introduction [PPT] [MHT4IE] [PDF]
- Course 2: Handling molecules and mass spectra [PPT] [MHT4IE] [PDF]
- Course 3: Mass spectral databases and database search [PPT] [MHT4IE] [PDF]
- Course 4: MS Tools and Concepts (mass accuracy, resolving power) [PPT] [MHT4IE] [PDF]
- Course 5: Discussion of mass spectrometry literature from homework; Software Demos
- Course 6: GC-MS data handling (deconvolution, DB search) [PPT] [MHT4IE] [PDF]
- Course 7: LC-MS data handling (deconvolution, MS/MS) [PPT] [MHT4IE] [PDF]
- Course 8: Discussion of software issues from homeworks and new software demos
- Course 9: Tools for mass spectral interpretation and simulation [PPT] [MHT4IE] [PDF]
- Course 10: Discussion of problems, Bring-One-Question and Class Evaluation
Graduate level course MCB221b - Mechanistic Enzymology (December 2007)
by Prof. Enoch Baldwin and Prof. Oliver Fiehn; Invited lectures:
Remark:
You can re-use all the teaching slides under the Creative Commons Licence (CC-by).
Reference: Tobias Kind - UC Davis Genome Center - Fiehnlab Metabolomics
This may not include pictures from WikiMedia and Office and other mentioned material.
-
- Tools for modeling metabolism - including reading lists and homework tasks
Remark:
You can re-use all the teaching slides under the Creative Commons Licence (CC-by).
Reference: Tobias Kind - UC Davis Genome Center - Fiehnlab Metabolomics
This may not include pictures from WikiMedia and Office and other mentioned material.
Created by
kind
Last modified 2008-03-14 04:51 PM
Last modified 2008-03-14 04:51 PM
