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Entrez WebService for NCBI

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creating client stubs for NCBI-services

Generating the client stubs for the NCBI web service:

To generate the client stubs for the NCBI webservice, you can use the Axis API. But you have to use the final version 1.2 of the API. In case you use the older version you ll get problems with generated Java Classes - they contain Java keywords - which makes it unpossible to use them.


Snipped of the ant build file:


<taskdef
        classname="org.apache.axis.tools.ant.wsdl.Wsdl2javaAntTask"   <-- requiered Task
        name="wsdl2java">
    <classpath refid="classpath.server"/>
</taskdef>
....

<wsdl2java
    url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl"
    output="${gendir}"
    deployscope="Application"
    serverSide="false"
    skeletonDeploy="true"
    timeout="-1"
    noimports="false"
    verbose="false"
    testcase="true"
    debug="false">

        ... mapping information - to map the namespaces to a "real" package name.
        <mappingset>
<mapping namespace="http://www.ncbi.nlm.nih.gov/soap/eutils/einfo" package="edu.ucdavis.setupX.core.communication.ncbi.remote.e1"/>

<mapping namespace="http://www.ncbi.nlm.nih.gov/soap/eutils/elink" package="edu.ucdavis.setupX.core.communication.ncbi.remote.e2"/>

<mapping namespace="http://www.ncbi.nlm.nih.gov/soap/eutils/esearch" package="edu.ucdavis.setupX.core.communication.ncbi.remote.e3"/>

<mapping namespace="http://www.ncbi.nlm.nih.gov/soap/eutils/esummary" package="edu.ucdavis.setupX.core.communication.ncbi.remote.e4"/>

<mapping namespace="http://www.ncbi.nlm.nih.gov/soap/eutils/efetch" package="edu.ucdavis.setupX.core.communication.ncbi.remote.e5"/>

<mapping namespace="http://www.ncbi.nlm.nih.gov/soap/eutils/egquery" package="edu.ucdavis.setupX.core.communication.ncbi.remote.e6"/>

<mapping namespace="http://www.ncbi.nlm.nih.gov/soap/eutils" package="edu.ucdavis.setupX.core.communication.ncbi.remote"/>
    </mappingset>
</wsdl2java>



http://eutils.ncbi.nlm.nih.gov/entrez/query/static/eutils_help.html
Created by scholz
Last modified 2005-06-20 03:53 PM
 
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