Fiehn databases

SetupX

To submit samples to the Metabolomics Core Lab the SetupX-System is used to capture the metadata about your experiment, samples. SetupX allows you to enter experimental designs for the metabolomics research and core lab at the UC Davis Genome Center.

SetupX and BinBase

SetupX and BinBase are two different databases that work together in an integrated way. SetupX is used to define experimental designs and also serves as user front end to download results. BinBase filters GC-TOF mass spectrometric data files and annotates compounds either as one of over 713 unique identified compounds with more than 1,100 spectra (http://fiehnlab.ucdavis.edu/Metabolite-Library-2007) or as unknowns, capturing these by database identifier numbers, retention index, mass spectra and further metadata. BinBase is administered by the front end GUI 'Bellerophon' which is only locally accessible in the Fiehn laboratory. BinBase results can therefore only be queried via SetupX.

Download SetupX

Here you can find the sources of SetupX for download.

Download BinBase

Here you can download BinBase.